Prepare species layers

TODO: description needed

prepSpeciesLayers_KNN(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  thresh = 10,
  ...
)

prepSpeciesLayers_CASFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_Pickell(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_ForestInventory(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_MBFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

prepSpeciesLayers_ONFRI(
  destinationPath,
  outputPath,
  url = NULL,
  studyArea,
  rasterToMatch,
  sppEquiv,
  sppEquivCol,
  ...
)

Arguments

destinationPath

path to data directory where objects will be downloaded or saved to

outputPath

TODO: description needed

url

if NULL, the default, use the default source url

studyArea

A SpatialPolygons* object used as the principle study region, passed to reproducible::prepInputs().

rasterToMatch

A RasterLayer objects to use as the template for all subsequent raster operations (i.e., the one used throughout the simulation).

sppEquiv

table with species name equivalencies between the kNN and final naming formats. See data("sppEquivalencies_CA", "LandR"). For functions that have mixedType, this only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use data("sppEquivalencies_CA", "LandR").

sppEquivCol

the column name to use from sppEquiv. For functions that have mixedType, only necessary if mixedType == 2. If not provided and mixedType == 2, will attempt to use "Boreal".

thresh

threshold \ If at least one pixel has cover >= thresh , the species is considered "present". Otherwise the raster is excluded from the output. Defaults to 10.

...

other arguments, used for compatibility with other prepSpeciesLayers functions.

Value

TODO: description needed