Generate vegetation type map

vegTypeMapGenerator(x, ...)

# S3 method for RasterStack
vegTypeMapGenerator(x, ..., doAssertion = getOption("LandR.doAssertion", TRUE))

# S3 method for data.table
vegTypeMapGenerator(
  x,
  pixelGroupMap,
  vegLeadingProportion = 0.8,
  mixedType = 2,
  sppEquiv = NULL,
  sppEquivCol,
  colors,
  pixelGroupColName = "pixelGroup",
  doAssertion = getOption("LandR.assertions", TRUE),
  ...
)

Arguments

x	Either a `cohortData` object or a `speciesCover` `RasterStack`
...	Additional arguments.
doAssertion	A logical indicating whether some internal tests should be run to ensure the function is running correctly. Default: `getOption("LandR.assertions", TRUE)`.
pixelGroupMap	A `RasterLayer` with pixel values equal to a pixel group number that corresponds exactly to `pixelGroup` column in `cohortData`.
vegLeadingProportion	Numeric between 0-1, determining the relative biomass threshold a species needs to pass to be considered "leading".
mixedType	An integer defining whether mixed stands are of any kind of species admixture (1), or only when deciduous mixed with conifer (2). Defaults to 2.
sppEquiv	table with species name equivalencies between the kNN and final naming formats. See `data("sppEquivalencies_CA", "LandR")`. Only necessary if `mixedType == 2`. If not provided and `mixedType == 2`, will attempt to use `data("sppEquivalencies_CA", "LandR")`.
sppEquivCol	the column name to use from `sppEquiv`. Only necessary if `mixedType == 2`. If not provided and `mixedType == 2`, will attempt to use "Boreal".
colors	A named vector of colour codes. The names MUST match the names of species in `cohortData$speciesCode`, plus an optional "Mixed" colour.
pixelGroupColName	Name of the column in `pixelGroup` to use.